论文
1. Huang, A.#, Song, X. H.#, Song, L. L., Pan, S. S., Tian, J. X., Wang, P. F., Ju, S. Y., Wang, Y. J.* Reshaping the substrate-binding pocket of ene-reductase for enhanced and inverted stereoselectivity: A concise access to the stereo-complementary chiral GABA derivatives. ACS Catalysis, 2025, 15: 1961-1972. DOI: 10.1021/acscatal.4c06784.
2. Yao, L. L.#, Xue, B.#, Ye, Y. F., Wang, Z. X., Li, Y. Y., Zheng, B. F. C., Ju, S. Y., Wang, Y. J.* Structure-guided engineering of carbonyl reductase LbCR to simultaneously enhance activity and thermostability toward bulky ketones. Journal of Agricultural and Food Chemistry, 2025, https://doi.org/10.1021/acs.jafc.5c01462.
3. Zhu, J. Q., Xu, J. N., Bian, X. R., Cheng P., Dou, Z., Dai, W. T., Ju, S. Y., Wang, Y. J.* Enhancing the stability and activity of enzymes through layer-by-layer immobilization with nanocomposite hydrogel. Biochemical Engineering Journal, 2025, 215: 109604. doi.org/10.1016/j.bej.2024.1096044.
4. Dou, Z., Hu, P. R., Song, L. L., Wang, Y. C., Tang, H. N., Weng, Z. Q., Wang, Y. J.,* Cai, Y. Q. Extensive gene mining and facile engineering of a novel carbonyl reductase for asymmetric synthesis of anti-aging (S)-Pro-Xylane from d-xylose. International Journal of Biological Macromolecules, 2025, 305 (Pt 2):140976. doi: 10.1016/j.ijbiomac.2025.140976.
5. Shafiq, M., Zeb, L., Wang, Y. J., Waqas W., Ali, S., Yang, Q. Q., Wong, K. H., Zhang, B. B.* Enhanced production of exopolysaccharide by Antrodia cinnamomea through batch feeding of tansglycocylated sugar mixture: Physicochemical properties, biotechnological application, and gut microbiota modulating potential. Chemical Engineering Journal, 2025, 505: 159730. doi.org/10.1016/j.cej.2025.159730.
6. Xue, B., Li, Y. Y., Zheng, B. F. C., Zhang, C., Hadiatullah H., Dai, W. T., Wang, Y. J., Fan Z. C.* Expression and characterization of recombinant triple laterosporulin in Chlamydomonas reinhardtii. Probiotics and Antimicrobial Proteins, 2025 , doi: 10.1007/s12602-025-10523-4.
7. Dai, C,. Tian, J. X., Chen, Y. F., Ni, Y. H., Cui, L., Cao, H. X., Song, L. L., Xu, S. Y., Wang, Y. J.,* Zheng, Y. G. Computer-aided design to enhance the stability of aldo-keto reductase KdAKR. Biotechnology Journal, 2024, 19 (3): e2300637. DOI:10.1002/biot.202300637.
8. Xu, S. Y., Chu, R. L., Liu, H. T., Weng, C. Y., Wang, Y. J.,* Zheng, Y. G. Computer-directed rational design enhanced the thermostability of carbonyl reductase LsCR for the synthesis of ticagrelor precursor. Biotechnology and Bioengineering, 2024, 121 (5): 1532-1542. doi: 10.1002/bit.28662.
9. Li, S. F., Gao, Y. C., Xu, H. B., Xu, C. L., Wang, Y. J.*, Liu, Z. Q., Zheng, Y. G. Substrate access tunnel engineering of a Fe-type nitrile hydratase from Pseudomonas fluorescens ZJUT001 for substrate preference adjustment and catalytic performance enhancement. Bioorganic Chemistry, 2024, 152: 107744. https://doi.org/10.1016/j.bioorg.2024.107744
10.Wang H.#, Liu D. #, Zhao, K. L., Wang, Y. J.*, Zhang, G. J.* SPDesign: protein sequence designer based on structural sequence profile using ultrafast shape recognition. Briefings in Bioinformatics, 2024, 25 (3): bbae146. https://doi.org/10.1093/bib/bbae146.
11.Zhang, W., Shao, Z. Q., Wang, Z. X., Ye, Y. F., Li, S. F., Wang, Y. J.* Advances in aldo-keto reductases immobilization for biocatalytic synthesis of chiral alcohols.International Journal of Biological Macromolecules, 2024, 274: 133264. https://doi.org/10.1016/j.ijbiomac.2024.133264
12.Xu, S. Y., Zhou, L., Xu, Y., Hong, H. Y., Dai, C., Wang, Y. J.*, Zheng, Y. G. Recent advances in structure-based enzyme engineering for functional reconstruction. Biotechnology and Bioengineering, 2023, 120 (12): 3427-3445. doi.org/10.1002/bit.28540.
13.Dai, C., Cao, H. X., Tian, J. X., Gao, Y. C., Liu, H. T., Xu, S. Y., Wang, Y. J.*, Zheng, Y. G. Structural-guided design to improve the catalytic performance of aldo-keto reductase KdAKR. Biotechnology and Bioengineering, 2023, 120 (12): 3543-3556. doi.org/10.1002/bit.28535.
14.Liu, H. T., Weng, C. Y., Zhou, L., Xu, H. B., Liao, Z. Y., Hong, H. Y., Ye, Y. F., Li, S. F., Wang, Y. J.*, Zheng, Y. G. Co-evolving stability and activity of LsCR by a single point mutation and constructing neat substrate bioreaction system. Biotechnology and Bioengineering, 2023, 120(6): 1521-1530. DOI: 10.1002/bit.28357.
15.Cheng F., Zhou, S. Y., Chen, L. X., Zhang, W., Li, S. F., Weng, C. Y., Wang, Y. J.*, Zheng, Y. G. Reaction-kinetic model-guided biocatalyst engineering for dual-enzyme catalyzed bioreaction system. Chemical Engineering Journal, 2023, 452: 138997. doi.org/10.1016/j.cej.2022.138997.
16.Li, S. F., Cheng, F., Wang, Y. J.*, Zheng, Y. G. Strategies for tailoring pH performances of glycoside hydrolases.Critical Reviews in Biotechnology, 2023, 43 (1): 121-141. doi: 10.1080/07388551.2021.2004084.
17.Zhang, W., Li, S. F., Zhu, J. Q., Cao, H.X., Liu, H. T., Shao, Z. Q., Xu, S. Y., Wang, Y. J.,* Zheng, Y. G. Constructing a continuous-flow bioreactor with co-immobilized KmAKR and BmGDH for synthesizing tert-butyl 6-cyano-(3R,5R)-dihydroxyhexanoate. Biochemical Engineering Journal, 2023, 197: 108964. https://doi.org/10.1016/j.bej.2023.108964.
18.Qiu, S., Xu, S. Y., Wang, Y. J.*, Zheng, Y. G. Chemoenzymatic catalysis of tert-butyl 6-cyano-(3R,5R)-dihydroxyhexanoate by aldo-keto reductase coupled with composite Fe3O4 nanozyme scaffold. Chemical Engineering Science, 2022, 261: 117935. doi.org/10.1016/j.ces.2022.117935.
19.Weng, C. Y., Gao, X. F. Chu, R. L., Xie, W. B., Wang, Y. J.*, Zheng, Y. G. Protein engineering of carbonyl reductases for asymmetric synthesis of ticagrelor precursor (S)-2-chloro-1-(3,4-difluorophenyl)ethanol. Biochemical Engineering Journal, 2022, 108600. doi.org/10.1016/j.bej.2022.108600.
20.Liu, H.T., Weng, C. Y., Xu, S. Y., Li, S. F., Wang, Y. J.*, Zheng, Y. G. Directed evolution of a carbonyl reductase LsCR for the enantioselective synthesis of (1S)-2-Chloro-1-(3,4-difluorophenyl) ethanol.Bioorganic Chemistry, 2022, 127: 105991. doi.org/10.1016/j.bioorg.2022.105991.
21.Cheng, F., Xie, W. B., Gao, X. F., Chu, R. L., Xu, S. Y., Wang, Y. J.*, Zheng, Y. G. Development of a new chemo-enzymatic catalytic route for synthesis of (S)-2-chlorophenylglycine. Journal of Biotechnology, 2022, 358: 17-24. doi.org/10.1016/j.jbiotec.2022.08.013.
22.Li, S. F., Xu, S.Y., Wang, Y. J.*, Zheng, Y. G. Tailoring pullulanase PulAR from Anoxybacillus sp. AR-29 for enhanced catalytic performance by a structure-guided consensus approach. Bioresources and Bioprocessing, 2022, 9: 25.
23.Pan, Z. T., Liu, T., Ma, Y. M., Yan, J. B., Wang, Y. J.*. Construction of quinazolin(thi)ones by brønsted acid/visible-light photoredox relay catalysis. Chinese Journal of Chemistry, 2022, 42 (9): 2823-2831. doi: 10.6023/cjoc202206001.
24.Cheng F., Chen Y., Qiu S., Zhai Q. Y., Liu, H. T., Li, S. F., Weng, C. Y., Wang, Y. J.*, Zheng, Y. G. Controlling stereopreference of carbonyl reductases for enantioselective synthesis of atorvastatin precursor. ACS Catalysis, 2021, 11 (5): 2572–2582. doi.org/10.1021/acscatal.0c05607.
25.Cheng, F., Zhai, Q. Y., Gao, X. F., Liu, H. T., Qiu, S., Wang, Y. J.*, Zheng, Y. G. Tuning enzymatic properties by protein engineering toward catalytic residues in carbonyl reductase. Biotechnology and Bioengineering, 2021, 118(12): 4643-4654. doi: 10.1002/bit.27925.
26.Li, S. F., Xie, J. Y., Qiu, S., Xu, S. Y., Cheng, F., Wang, Y. J.*, Zheng, Y. G. Semi-rational engineering of an aldo-keto reductase KmAKR for overcoming trade-offs between catalytic activity and thermostability. Biotechnology and Bioengineering, 2021, 118 (11): 4441-4452. DOI: 10.1002/bit.27913.
27.Qiu, S., Xu, S. Y., Li, S. F., Meng, K. M., Chen, F., Wang, Y. J.*, Zheng, Y. G. Fluorescence-based screening for engineered aldo-keto reductase KmAKR with extended substrate scope and improved catalytic performance. Biotechnology Journal, 2021, 16 (9): 2100130. DOI:10.1002/biot.202100130.
28.Weng, C. Y., Wang, C. E., Xie, W. B., Xu, S. Y., Wang, Y. J.*, Zheng, Y. G. Comparative proteome analysis of Actinoplanes utahensis grown on various saccharides based on 2D-DIGE and MALDI-TOF/TOF-MS. Journal of Proteomics, 2021, 239: 104193. doi.org/10.1016/j.jprot.2021.104193.
29.Li, S. F., Xie, J. Y., Qiu, S., Zhou, S. Y., Wang, Y. J.*, Zheng, Y. G. Tailoring an aldo-keto reductase KmAKR for robust thermostability and catalytic efficiency by stepwise evolution and structure-guided consensus engineering. Bioorganic Chemistry, 2021, 109: 104712. doi.org/10.1016/j.bioorg.2021.104712.
30.Weng, C. Y., Wang, D. N., Ban, S. Y., Zhai, Q. Y. Hu, X. Y., Cheng, F., Wang, Y. J.*, Zheng, Y. G. One-step eantioselective bioresolution for (S)-2-chlorophenylglycine methyl ester catalyzed by the immobilized Protease 6SD on multi-walled carbon nanotubes in a triphasic system. Journal of Biotechnology, 2021, 325: 294-302. doi.org/10.1016/j.jbiotec.2020.10.007.
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